BNMPy.build_bn_from_kg¶
- BNMPy.build_bn_from_kg.add_genes_to_network(bn, gene_list, input_format='symbol', joiner='inhibitor_wins', outer_joiner='&')[source]¶
Creates an augmented boolean network from SigNOR using all of the genes along with the genes already present in bn. Tries to build a connected Steiner subgraph…
- Args:
bn - a BooleanNetwork object gene_list - list of gene symbols, gene ids, or uniprot ids. input_format - “symbol”, “id”, or “uniprot” joiner - “&”, “|”, or “inhibitor_wins” - used for the knowledge graph-derived network. outer_joiner - “&” or “|”
- BNMPy.build_bn_from_kg.load_signor_network(gene_list, input_format='symbol', joiner='&')[source]¶
Creates a boolean network from SigNOR using all of the provided genes. Tries to build a connected Steiner subgraph…
- Args:
gene_list - list of gene symbols, gene ids, or uniprot ids. input_format - “symbol”, “id”, or “uniprot” joiner - “&”, “|”, or “inhibitor_wins”