Welcome to UNCURL’s documentation!

Contents:

• UNCURL
  • Installation
  • Publications
• Features
  • State Estimation
  • Distribution Selection
  • Qualitative to Quantitative Framework
  • Clustering
  • Dimensionality Reduction
  • Lineage Estimation & Pseudotime
  • Miscellaneous
  • Included datasets
• Details on unsupported methods
  • Alternative state estimation methods
  • Alternative clustering methods
  • Dimensionality reduction
  • Lineage estimation
  • Ensemble Methods
  • Visualization
• Non-default parameters: things we tried and their results
  • Cell normalization
  • Constrained W
  • Uncurl initialization options
  • Alternative to QualNorm: mean-normalized initialization
  • Optimization methods
• uncurl package
  • Submodules
  • uncurl.preprocessing module
  • uncurl.run_se module
  • uncurl.state_estimation module
  • uncurl.nmf_wrapper module
  • uncurl.qual2quant module
  • uncurl.clustering module
  • uncurl.dimensionality_reduction module
  • uncurl.evaluation module
  • uncurl.experiment_runner module
  • uncurl.lineage module
  • uncurl.nb_cluster module
  • uncurl.nb_state_estimation module
  • uncurl.pois_ll module
  • uncurl.simulation module
  • Module contents

Indices and tables

• Index
• Module Index
• Search Page